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Structure of type II terpene cyclase mste from scytonema in complex with farnesyl dihydroxybenzoate

Analyse Structure of type II terpene cyclase mste from scytonema in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6SBC
Type: protein
Length: 352 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mste
UniProt: A0A2D1CM82
Ligands: L4H, NA, CL
Pockets: 4 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mste	protein	352	53% helix, 7% strand	A0A2D1CM82

Ligands and binding sites

L4H · farnesyl dihydroxybenzoate · ligand · chains A
NA · Sodium ion · metal · 2 copies · chains A
CL · Chloride ion · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	245	0.78	0.90	29	L4H
2	143	0.43	0.75	27	empty
3	105	0.38	0.75	20	empty
4	93	0.36	0.75	21	CL

Compared structures

6SBC · Structure of type II terpene cyclase MstE from Scytonema in complex with farnesyl… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2D1CM82
Elsewhere: RCSB PDB 6SBC · PDBe 6SBC · UniProt A0A2D1CM82

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