MolNFT v1 · #163631 · protein

Extended structure of the human DDX6 C-terminal domain in complex with an EDC3 fdf peptide

6S8S: “Extended structure of the human DDX6 C-terminal domain in complex with an EDC3 fdf peptide”. X-ray diffraction, 1 ligand (PO4). MolNFT v1 #163631 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6S8S
Type: protein
Length: 415 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P26196, Q96F86
Ligands: PO4

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	168	—	P26196
B, D	—	protein	37	—	Q96F86
C	—	protein	173	—	P26196

Ligands and binding sites

PO4 · Phosphate ion · ion · 9 copies · chains A, B, C, D
CXS · 3-cyclohexyl-1-propylsulfonic acid · additive · 5 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6S8S · Extended structure of the human DDX6 C-terminal domain in complex with an EDC3 FDF peptide · the same entry in another collection · chain D against D, TM-score 1.00
P26196 · AlphaFold monomer V2.0 prediction for probable ATP-dependent RNA helicase DDX6 (P26196) · a predicted model of the same protein · chain A against A, TM-score 0.94
Q96F86 · AlphaFold monomer V2.0 prediction for enhancer of mRNA-decapping protein 3 (Q96F86) · a predicted model of the same protein · chain B against A, TM-score 0.50

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P26196
Every structure of UniProt Q96F86
Elsewhere: RCSB PDB 6S8S · PDBe 6S8S · UniProt P26196 · UniProt Q96F86

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