MolNFT v1 · #163627 · protein
Cryo-EM structure of LPTB2FGC in complex with lipopolysaccharide
6S8N: “Cryo-EM structure of LPTB2FGC in complex with lipopolysaccharide”. Electron microscopy, 3 ligands (DCQ, LMN, L0W). MolNFT v1 #163627 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6S8N
- Type
- protein
- Length
- 970 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- E7T9E6, D2A8C1, P0AFA1, A0A2S4N3I3
- Ligands
- DCQ, LMN, L0W
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 239 | — | E7T9E6 |
| B | — | protein | 238 | — | E7T9E6 |
| C | — | protein | 24 | — | D2A8C1 |
| F | — | protein | 239 | — | P0AFA1 |
| G | — | protein | 230 | — | A0A2S4N3I3 |
Ligands and binding sites
- DCQ · 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione · ligand · 2 copies · chains B, F, G
- LMN · Lauryl Maltose Neopentyl Glycol · ligand · 2 copies · chains C, F, G
- L0W · lipopolysaccharide fragment · ligand · chains F, G
- LMT · Dodecyl-beta-D-maltoside · additive · 2 copies · chains F, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6S8N · Cryo-EM structure of LptB2FGC in complex with lipopolysaccharide · the same entry in another collection · chain A against A, TM-score 1.00
- P0AFA1 · AlphaFold monomer V2.0 prediction for lipopolysaccharide export system permease protein… · a predicted model of the same protein · chain F against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E7T9E6
- Every structure of UniProt D2A8C1
- Every structure of UniProt P0AFA1
- Every structure of UniProt A0A2S4N3I3
- Elsewhere: RCSB PDB 6S8N · PDBe 6S8N · UniProt E7T9E6 · UniProt D2A8C1 · UniProt P0AFA1 · UniProt A0A2S4N3I3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.