MolNFT v1 · #163568 · protein
X-ray crystal structure of the FORMYLTRANSFERASE/HYDROLASE complex (fhcabcd) from methylorubrum extorquens in complex with methylofuran
6S6Y: “X-ray crystal structure of the FORMYLTRANSFERASE/HYDROLASE complex (fhcabcd) from methylorubrum extorquens in…”. X-ray diffraction, 8 ligands (MFN, L6K, K). MolNFT v1 #163568 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6S6Y
- Type
- protein
- Length
- 5,914 residues
- Chains
- 16
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A9W3R9, A9W3S0, A9W3R7, A9W3R8
- Ligands
- MFN, L6K, K, ZN, CA, NA, CL, NH2
Structure
x-ray diffraction · 13 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 548 | — | A9W3R9 |
| B | — | protein | 357 | — | A9W3S0 |
| C, O | — | protein | 268 | — | A9W3R7 |
| D, P | — | protein | 310 | — | A9W3R8 |
| E | — | protein | 542 | — | A9W3R9 |
| F, N | — | protein | 355 | — | A9W3S0 |
| G | — | protein | 265 | — | A9W3R7 |
| H | — | protein | 308 | — | A9W3R8 |
| I | — | protein | 548 | — | A9W3R9 |
| J | — | protein | 356 | — | A9W3S0 |
| K | — | protein | 267 | — | A9W3R7 |
| L | — | protein | 311 | — | A9W3R8 |
| M | — | protein | 546 | — | A9W3R9 |
Ligands and binding sites
- MFN · N-[4,5,7-tricarboxyheptanoyl]-L-gamma-glutamyl-N-{2-[4-({5-[(formylamino)methyl]-3-furyl}methoxy) phenyl]ethyl}-D-glutamine · ligand · chains A
- L6K · (2~{S})-3-[4-[[5-(aminomethyl)furan-3-yl]methoxy]phenyl]-2-(methylamino)propanoic acid · ligand · chains I
- K · Potassium ion · metal · 9 copies · chains A, D, H, I, J, K, L, P
- ZN · Zinc ion · metal · 8 copies · chains A, E, I, M
- CA · Calcium ion · metal · 6 copies · chains A, B, L, P
- NA · Sodium ion · metal · chains J
- CL · Chloride ion · ion · 5 copies · chains A, B, C, I, J, K
- NH2 · Amino group · ion · chains A, B
- FMT · Formic acid · additive · 3 copies · chains A, I, J
- GOL · Glycerol · additive · 2 copies · chains A, B, H
- EDO · 1,2-ethanediol · additive · chains I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6S6Y · X-ray crystal structure of the formyltransferase/hydrolase complex (FhcABCD) from… · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9W3R9
- Every structure of UniProt A9W3S0
- Every structure of UniProt A9W3R7
- Every structure of UniProt A9W3R8
- Elsewhere: RCSB PDB 6S6Y · PDBe 6S6Y · UniProt A9W3R9 · UniProt A9W3S0 · UniProt A9W3R7 · UniProt A9W3R8
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