MolNFT v1 · #163479 · protein + DNA
Avaii restriction endonuclease in complex with partially cleaved dsdna
6S48: “Avaii restriction endonuclease in complex with partially cleaved dsdna”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #163479 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6S48
- Type
- protein + DNA
- Length
- 508 residues
- Chains
- 9
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8YYB7
- Ligands
- CA
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 235 | — | Q8YYB7 |
| B | — | protein | 229 | — | Q8YYB7 |
| C | — | dna | 11 | — | — |
| D, H | — | dna | 4 | — | — |
| E, I | — | dna | 7 | — | — |
| F | — | dna | 4 | — | — |
| G | — | dna | 7 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 5 copies · chains A, C, I, B, E, G, D, F, H
- BME · Beta-mercaptoethanol · additive · 2 copies · chains A, B
- 1PE · Pentaethylene glycol · additive · chains B
- PGE · Triethylene glycol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6S48 · AvaII RESTRICTION ENDONUCLEASE IN COMPLEX WITH PARTIALLY CLEAVED dsDNA · the same entry in another collection · chain I against I, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8YYB7
- Elsewhere: RCSB PDB 6S48 · PDBe 6S48 · UniProt Q8YYB7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.