MolNFT v1 · #163413 · protein
Acquired functional capsid structures in metazoan totivirus-like dsrna virus.
6S2C · Capsid protein: “Acquired functional capsid structures in metazoan totivirus-like dsrna virus.”. Electron microscopy, 18 pockets (best druggability 0.82). MolNFT v1 #163413 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6S2C
- Type
- protein
- Length
- 1,661 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein
- UniProt
- E1CI69
- Pockets
- 18 · best druggability 0.82
Structure
electron microscopy · 2 distinct chains · 22% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein | protein | 830 | 23% helix, 14% strand | E1CI69 |
| B | Capsid protein | protein | 831 | 22% helix, 15% strand | E1CI69 |
Pockets
18 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1155 | 0.82 | 0.83 | 169 | empty |
| 2 | 618 | 0.76 | 0.82 | 83 | empty |
| 3 | 58 | 0.72 | 0.99 | 30 | empty |
| 4 | 372 | 0.71 | 0.83 | 63 | empty |
| 5 | 68 | 0.64 | 0.92 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 2860 Ų buried · 38 hydrogen bonds · protein-protein
Compared structures
- 6S2C · Acquired functional capsid structures in metazoan totivirus-like dsRNA virus. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E1CI69
- Elsewhere: RCSB PDB 6S2C · PDBe 6S2C · UniProt E1CI69
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