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Acquired functional capsid structures in metazoan totivirus-like dsrna virus.

Analyse Acquired functional capsid structures in metazoan totivirus-like dsrna virus. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6S2C
Type: protein
Length: 1,661 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsid protein
UniProt: E1CI69
Pockets: 18 · best druggability 0.82

Structure

electron microscopy · 2 distinct chains · 22% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Capsid protein	protein	830	23% helix, 14% strand	E1CI69
B	Capsid protein	protein	831	22% helix, 15% strand	E1CI69

Pockets

18 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1155	0.82	0.83	169	empty
2	618	0.76	0.82	83	empty
3	58	0.72	0.99	30	empty
4	372	0.71	0.83	63	empty
5	68	0.64	0.92	23	empty

Interfaces

1 interface between chains.

A–B · 2860 Å² buried · 38 hydrogen bonds · protein-protein

Compared structures

6S2C · Acquired functional capsid structures in metazoan totivirus-like dsRNA virus. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E1CI69
Elsewhere: RCSB PDB 6S2C · PDBe 6S2C · UniProt E1CI69

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