MolNFT v1 · #163354 · protein
Crystal structure of escherichia COLI glyoxalase II with L-tartrate in the active site
6S0I · Hydroxyacylglutathione hydrolase glob: “Crystal structure of escherichia COLI glyoxalase II with L-tartrate in the active site”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.30). MolNFT v1 #163354 on GenesisL1: 3D…
- PDB
- 6S0I
- Type
- protein
- Length
- 251 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hydroxyacylglutathione hydrolase glob
- EC
- 3.1.2.6
- UniProt
- P0AC84
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.30
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hydroxyacylglutathione hydrolase glob (EC 3.1.2.6) | protein | 251 | 38% helix, 25% strand | P0AC84 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
- TLA · L(+)-tartaric acid · additive · chains A
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.30 | 0.75 | 17 | TLA, EPE |
Modifications
Observed in the structure: 1 covalent (additive adduct).
Compared structures
- 6S0I · Crystal structure of Escherichia coli Glyoxalase II with L-Tartrate in the active site · the same entry in another collection · chain A against A, TM-score 1.00
- P0AC84 · AlphaFold monomer V2.0 prediction for hydroxyacylglutathione hydrolase glob (P0AC84) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AC84
- Elsewhere: RCSB PDB 6S0I · PDBe 6S0I · UniProt P0AC84
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.