MolNFT v1 · #163347 · protein

Crystal structure of properdin in complex with the ctc domain of C3/C3B

6S0B: “Crystal structure of properdin in complex with the ctc domain of C3/C3B”. X-ray diffraction, 4 ligands (MAN, FUC, BGC). MolNFT v1 #163347 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6S0B
Type: protein
Length: 461 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P27918, P01024
Ligands: MAN, FUC, BGC, NAG

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	219	—	P27918
B	—	protein	103	—	P27918
C	—	protein	139	—	P01024

Ligands and binding sites

MAN · alpha-D-mannopyranose · sugar · 8 copies · chains A, B
FUC · alpha-L-fucopyranose · sugar · chains A
BGC · beta-D-glucopyranose · sugar · chains A, B
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6S0B · Crystal Structure of Properdin in complex with the CTC domain of C3/C3b · the same entry in another collection · chain A against A, TM-score 1.00
P01024 · AlphaFold monomer V2.0 prediction for complement C3 (P01024) · a predicted model of the same protein · chain C against A, TM-score 0.97
P27918 · AlphaFold monomer V2.0 prediction for properdin (P27918) · a predicted model of the same protein · chain B against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P27918
Every structure of UniProt P01024
Elsewhere: RCSB PDB 6S0B · PDBe 6S0B · UniProt P27918 · UniProt P01024

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