MolNFT v1 · #163291 · protein
Structure of conglutinin carbohydrate recognition domain with glcnac- alpha-1-phosphate bound
6RYN: “Structure of conglutinin carbohydrate recognition domain with glcnac- alpha-1-phosphate bound”. X-ray diffraction, 2 ligands (GN1, CA). MolNFT v1 #163291 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6RYN
- Type
- protein
- Length
- 117 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Conglutinin
- UniProt
- P23805
- Ligands
- GN1, CA
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Conglutinin | protein | 117 | 21% helix, 25% strand | P23805 |
Ligands and binding sites
- GN1 · 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose · ligand · chains A
- CA · Calcium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6RYN · Structure of conglutinin carbohydrate recognition domain with GlcNAc-alpha-1-phosphate… · the same entry in another collection · chain A against A, TM-score 1.00
- P23805 · AlphaFold monomer V2.0 prediction for conglutinin (P23805) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P23805
- Elsewhere: RCSB PDB 6RYN · PDBe 6RYN · UniProt P23805
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