MolNFT v1 · #162998 · protein

Crystal structure of PHOCDC21-1 intein

6RPQ · Ubiquitin-like protein SMT3,1108AA long hypothetical cell…: “Crystal structure of PHOCDC21-1 intein”. X-ray diffraction, 1 pocket (best druggability 0.27). MolNFT v1 #162998 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 6RPQ
Type: protein
Length: 249 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ubiquitin-like protein SMT3,1108AA long hypothetical cell division control protein
UniProt: Q12306, O58310
Pockets: 1 · best druggability 0.27

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ubiquitin-like protein SMT3,1108AA long hypothetical cell division control protein	protein	249	13% helix, 46% strand	Q12306, O58310

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.27	0.73	15	empty

Compared structures

6RPQ · Crystal structure of PhoCDC21-1 intein · the same entry in another collection · chain A against A, TM-score 1.00
Q12306 · AlphaFold monomer V2.0 prediction for ubiquitin-like protein SMT3 (Q12306) · a predicted model of the same protein · chain A against A, TM-score 0.31

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q12306
Every structure of UniProt O58310
Elsewhere: RCSB PDB 6RPQ · PDBe 6RPQ · UniProt Q12306 · UniProt O58310

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