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MolNFT v1 · #162905 · protein

Crystal structure of disulphide-linked human C3D dimer in complex with staphylococcus aureus complement subversion protein sbi-IV

6RMU: “Crystal structure of disulphide-linked human C3D dimer in complex with staphylococcus aureus complement…”. X-ray diffraction. MolNFT v1 #162905 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6RMU
Type
protein
Length
727 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P01024, Q931F4

Structure

x-ray diffraction · 4 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein299—P01024
C—protein62—Q931F4
B—protein300—P01024
D—protein66—Q931F4

Ligands and binding sites

  • PEG · Di(hydroxyethyl)ether · additive · chains A, B
  • EDO · 1,2-ethanediol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6RMU · Crystal structure of disulphide-linked human C3d dimer in complex with Staphylococcus… · the same entry in another collection · chain D against D, TM-score 1.00
  • Q931F4 · AlphaFold monomer V2.0 prediction for immunoglobulin-binding protein sbi (Q931F4) · a predicted model of the same protein · chain C against A, TM-score 0.98
  • P01024 · AlphaFold monomer V2.0 prediction for complement C3 (P01024) · a predicted model of the same protein · chain A against A, TM-score 0.87

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