MolNFT v1 · #162832 · protein

The crystal structure of abne (selenium derivative), an arabino- oligosaccharide binding protein, in complex with arabinohexaose

6RKH · Arabino-oligosaccharids-binding protein: “The crystal structure of abne (selenium derivative), an arabino- oligosaccharide binding protein, in complex…”. X-ray diffraction, 2 ligands (AHR, CA), 3 pockets (best druggability 0.76).…

PDB: 6RKH
Type: protein
Length: 415 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Arabino-oligosaccharids-binding protein
UniProt: B3EYM9
Ligands: AHR, CA
Pockets: 3 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Arabino-oligosaccharids-binding protein	protein	415	48% helix, 15% strand	B3EYM9

Ligands and binding sites

AHR · alpha-L-arabinofuranose · sugar · 6 copies · chains A
CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	858	0.76	0.79	70	AHR
2	153	0.46	0.76	33	empty
3	122	0.42	0.76	16	empty

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

6RKH · The crystal structure of AbnE (Selenium derivative), an arabino-oligosaccharide binding… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B3EYM9
Elsewhere: RCSB PDB 6RKH · PDBe 6RKH · UniProt B3EYM9

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.