MolNFT v1 · #162523 · protein

Crystal structure of NAD kinase 1 from listeria monocytogenes in complexe with an adenine derivative

6RBS: “Crystal structure of NAD kinase 1 from listeria monocytogenes in complexe with an adenine derivative”. X-ray diffraction, 1 ligand (JXT), 1 pocket (best druggability 0.55). MolNFT v1 #162523 on GenesisL1: 3D structure, binding sites…

PDB: 6RBS
Type: protein
Length: 261 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: NAD kinase 1
EC: 2.7.1.23
UniProt: Q8Y8D7
Ligands: JXT
Pockets: 1 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 21% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	NAD kinase 1 (EC 2.7.1.23)	protein	261	21% helix, 42% strand	Q8Y8D7

Ligands and binding sites

JXT · 8-bromanyl-9-pent-4-ynyl-purin-6-amine · ligand · chains A
CIT · Citric acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	113	0.55	0.83	23	CIT

Compared structures

6RBS · Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an adenine… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8Y8D7
Elsewhere: RCSB PDB 6RBS · PDBe 6RBS · UniProt Q8Y8D7

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.