MolNFT v1 · #162453 · protein
Peroxy diiron species of chemotaxis sensor odp
6R9N · Uncharacterized protein: “Peroxy diiron species of chemotaxis sensor odp”. X-ray diffraction, 4 ligands (FE, PER, O), 4 pockets (best druggability 0.69). MolNFT v1 #162453 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6R9N
- Type
- protein
- Length
- 465 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- M2CWM4
- Ligands
- FE, PER, O, CL
- Pockets
- 4 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 233 | 33% helix, 25% strand | M2CWM4 |
| B | Uncharacterized protein | protein | 232 | 33% helix, 25% strand | M2CWM4 |
Ligands and binding sites
- FE · Fe (III) ion · metal · 4 copies · chains A, B
- PER · Peroxide ion · ion · 2 copies · chains A, B
- O · Oxygen atom · ion · 2 copies · chains A, B
- CL · Chloride ion · ion · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 656 | 0.69 | 0.77 | 77 | PER |
| 2 | 130 | 0.46 | 0.77 | 23 | empty |
| 3 | 78 | 0.34 | 0.75 | 20 | empty |
| 4 | 59 | 0.30 | 0.74 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 1977 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 6R9N · Peroxy diiron species of chemotaxis sensor ODP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M2CWM4
- Elsewhere: RCSB PDB 6R9N · PDBe 6R9N · UniProt M2CWM4
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