MolNFT v1 · #162328 · protein + RNA
Cryo-EM structure of a POLY(A) rnp bound to the PAN2-PAN3 deadenylase
6R5K: “Cryo-EM structure of a POLY(A) rnp bound to the PAN2-PAN3 deadenylase”. Electron microscopy, 1 ligand (MG). MolNFT v1 #162328 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6R5K
- Type
- protein + RNA
- Length
- 2,932 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P53010, P04147, P36102
- Ligands
- MG
Structure
electron microscopy · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1040 | — | P53010 |
| D | — | protein | 390 | — | P04147 |
| E | — | rna | 67 | — | — |
| F | — | protein | 165 | — | P04147 |
| H | — | protein | 394 | — | P04147 |
| N | — | protein | 429 | — | P36102 |
| O | — | protein | 447 | — | P36102 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6R5K · Cryo-EM structure of a poly(A) RNP bound to the Pan2-Pan3 deadenylase · the same entry in another collection · chain O against O, TM-score 1.00
- P36102 · AlphaFold monomer V2.0 prediction for PAN2-PAN3 deadenylation complex subunit PAN3… · a predicted model of the same protein · chain O against A, TM-score 0.92
- P53010 · AlphaFold monomer V2.0 prediction for PAN2-PAN3 deadenylation complex catalytic subunit… · a predicted model of the same protein · chain A against A, TM-score 0.72
- P04147 · AlphaFold monomer V2.0 prediction for polyadenylate-binding protein, cytoplasmic and… · a predicted model of the same protein · chain F against A, TM-score 0.72
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53010
- Every structure of UniProt P04147
- Every structure of UniProt P36102
- Elsewhere: RCSB PDB 6R5K · PDBe 6R5K · UniProt P53010 · UniProt P04147 · UniProt P36102
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