MolNFT v1 · #162258 · protein
Family 11 carbohydrate-binding module from clostridium thermocellum in complex with beta-1,3-1,4-mixed-linked tetrasaccharide
6R3M · Endoglucanase H: “Family 11 carbohydrate-binding module from clostridium thermocellum in complex with beta-1,3-1,4-mixed-linked…”. X-ray diffraction, 4 ligands (BGC, GLC, CA), 1 pocket (best druggability 0.29). MolNFT v1 #162258 on…
- PDB
- 6R3M
- Type
- protein
- Length
- 175 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endoglucanase H
- EC
- 3.2.1.4
- UniProt
- P16218
- Ligands
- BGC, GLC, CA, PO4
- Pockets
- 1 · best druggability 0.29
Structure
x-ray diffraction · 1 distinct chain · 2% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endoglucanase H (EC 3.2.1.4) | protein | 175 | 2% helix, 50% strand | P16218 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 4 copies · chains A
- GLC · alpha-D-glucopyranose · sugar · chains A
- CA · Calcium ion · metal · 2 copies · chains A
- PO4 · Phosphate ion · ion · 4 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.29 | 0.75 | 17 | BGC, GLC |
Compared structures
- 6R3M · Family 11 Carbohydrate-Binding Module from Clostridium thermocellum in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- P16218 · AlphaFold monomer V2.0 prediction for endoglucanase H (P16218) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16218
- Elsewhere: RCSB PDB 6R3M · PDBe 6R3M · UniProt P16218
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.