MolNFT v1 · #162232 · protein
Zinc-ALPHA2-glycoprotein with a fluorescent dansyl C 11 fatty acid
6R2U: “Zinc-ALPHA2-glycoprotein with a fluorescent dansyl C 11 fatty acid”. X-ray diffraction, 3 ligands (11D, SO4, AZI). MolNFT v1 #162232 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6R2U
- Type
- protein
- Length
- 1,633 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P25311
- Ligands
- 11D, SO4, AZI
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, D, F | — | protein | 272 | — | P25311 |
| B | — | protein | 273 | — | P25311 |
| E | — | protein | 272 | — | P25311 |
Ligands and binding sites
- 11D · 11-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino) undecanoic acid · ligand · 8 copies · chains A, B, C, D, E, F
- SO4 · Sulfate ion · ion · 14 copies · chains A, F, B, C, D, E
- AZI · Azide ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6R2U · Zinc-alpha2-Glycoprotein with a Fluorescent Dansyl C 11 Fatty Acid · the same entry in another collection · chain F against F, TM-score 1.00
- P25311 · AlphaFold monomer V2.0 prediction for zinc-alpha-2-glycoprotein (P25311) · a predicted model of the same protein · chain B against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25311
- Elsewhere: RCSB PDB 6R2U · PDBe 6R2U · UniProt P25311
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