MolNFT v1 · #162204 · protein
Cereblon isoform 4 from magnetospirillum gryphiswaldense in complex with compound 7A
6R1X: “Cereblon isoform 4 from magnetospirillum gryphiswaldense in complex with compound 7A”. X-ray diffraction, 2 ligands (JPQ, ZN). MolNFT v1 #162204 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6R1X
- Type
- protein
- Length
- 293 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A4TVL0
- Ligands
- JPQ, ZN
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 104 | — | A4TVL0 |
| B | — | protein | 105 | — | A4TVL0 |
| C | — | protein | 84 | — | A4TVL0 |
Ligands and binding sites
- JPQ · ~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-3-methyl-but-2-enamide · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6R1X · Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 7a · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4TVL0
- Elsewhere: RCSB PDB 6R1X · PDBe 6R1X · UniProt A4TVL0
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