MolNFT v1 · #162165 · protein
Cereblon isoform 4 from magnetospirillum gryphiswaldense in complex with compound 5A and hydrolysis product
6R0U: “Cereblon isoform 4 from magnetospirillum gryphiswaldense in complex with compound 5A and hydrolysis product”. X-ray diffraction, 6 ligands (EF2, JO8, JO5). MolNFT v1 #162165 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6R0U
- Type
- protein
- Length
- 320 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A4TVL0
- Ligands
- EF2, JO8, JO5, ZN, PO4, CL
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 109 | — | A4TVL0 |
| B | — | protein | 105 | — | A4TVL0 |
| C | — | protein | 106 | — | A4TVL0 |
Ligands and binding sites
- EF2 · S-Thalidomide · ligand · chains A
- JO8 · 3-azanyl-2-[[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamoyl]benzoic acid · ligand · chains B
- JO5 · 4-azanyl-2-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]isoindole-1,3-dione · ligand · chains C
- ZN · Zinc ion · metal · 3 copies · chains A, B, C
- PO4 · Phosphate ion · ion · 3 copies · chains A, B, C
- CL · Chloride ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6R0U · Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 5a and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4TVL0
- Elsewhere: RCSB PDB 6R0U · PDBe 6R0U · UniProt A4TVL0
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