MolNFT v1 · #162098 · protein
Structure of mbp-mcl-1 in complex with compound 8A
6QYL · MALTOSE/MALTODEXTRIN-binding periplasmic PROTEIN,INDUCED…: “Structure of mbp-mcl-1 in complex with compound 8A”. X-ray diffraction, 3 ligands (JLE, GLC, NA), 8 pockets (best druggability 0.71). MolNFT v1 #162098 on GenesisL1: 3D…
- PDB
- 6QYL
- Type
- protein
- Length
- 513 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MALTOSE/MALTODEXTRIN-binding periplasmic PROTEIN,INDUCED myeloid leukemia cell…
- UniProt
- P0AEY0, Q07820
- Ligands
- JLE, GLC, NA
- Pockets
- 8 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MALTOSE/MALTODEXTRIN-binding periplasmic PROTEIN,INDUCED myeloid leukemia cell differentiation protein mcl-1 | protein | 513 | 55% helix, 14% strand | P0AEY0, Q07820 |
Ligands and binding sites
- JLE · (2~{R})-2-[[6-ethyl-5-(1~{H}-indol-4-yl)thieno[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid · ligand · chains A
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 293 | 0.71 | 0.84 | 30 | GLC, NA |
| 2 | 393 | 0.60 | 0.76 | 29 | empty |
| 3 | 101 | 0.44 | 0.78 | 13 | JLE |
| 4 | 62 | 0.40 | 0.80 | 15 | empty |
| 5 | 51 | 0.37 | 0.81 | 15 | empty |
Compared structures
- 6QYL · Structure of MBP-Mcl-1 in complex with compound 8a · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEY0
- Every structure of UniProt Q07820
- Elsewhere: RCSB PDB 6QYL · PDBe 6QYL · UniProt P0AEY0 · UniProt Q07820
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