MolNFT v1 · #162003 · protein
Undecaheme cytochrome from S-layer of carboxydothermus ferrireducens
6QVM: “Undecaheme cytochrome from S-layer of carboxydothermus ferrireducens”. X-ray diffraction, 4 ligands (HEC, NGA, CA). MolNFT v1 #162003 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6QVM
- Type
- protein
- Length
- 658 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- HEC, NGA, CA, PO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 658 | — | — |
Ligands and binding sites
- HEC · Heme C · ligand · 11 copies · chains A
- NGA · 2-acetamido-2-deoxy-beta-D-galactopyranose · sugar · 7 copies · chains A
- CA · Calcium ion · metal · chains A
- PO4 · Phosphate ion · ion · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6QVM · Undecaheme cytochrome from S-layer of Carboxydothermus ferrireducens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6QVM · PDBe 6QVM
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