MolNFT v1 · #161923 · protein
Crystal structure of REA1-midas domain from chaetomium thermophilum
6QT8 · Midasin: “Crystal structure of REA1-midas domain from chaetomium thermophilum”. X-ray diffraction, 2 ligands (SO4, IOD), 3 pockets (best druggability 0.45). MolNFT v1 #161923 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6QT8
- Type
- protein
- Length
- 289 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Midasin
- UniProt
- G0SHE6
- Ligands
- SO4, IOD
- Pockets
- 3 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Midasin | protein | 289 | 48% helix, 16% strand | G0SHE6 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 5 copies · chains A
- IOD · Iodide ion · ion · 3 copies · chains A
- GOL · Glycerol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 118 | 0.45 | 0.78 | 24 | empty |
| 2 | 106 | 0.45 | 0.78 | 20 | empty |
| 3 | 59 | 0.28 | 0.73 | 12 | empty |
Compared structures
- 6QT8 · Crystal structure of Rea1-MIDAS domain from Chaetomium thermophilum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G0SHE6
- Elsewhere: RCSB PDB 6QT8 · PDBe 6QT8 · UniProt G0SHE6
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