GL1X · GenesisL1 explorer

MolNFT v1 · #161641 · protein

2-naphthoyl-CoA reductase-2-naphthoyl-CoA COMPLEX(NCR-ncoa-soaked complex)

6QKR: “2-naphthoyl-CoA reductase-2-naphthoyl-CoA COMPLEX(NCR-ncoa-soaked complex)”. X-ray diffraction, 4 ligands (SF4, FAD, FMN). MolNFT v1 #161641 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6QKR
Type
protein
Length
1,324 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
E1YD54
Ligands
SF4, FAD, FMN, J5H

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein660—E1YD54
B—protein664—E1YD54

Ligands and binding sites

  • SF4 · Iron/sulfur cluster · ligand · 2 copies · chains A, B
  • FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
  • FMN · Flavin mononucleotide · ligand · 2 copies · chains A, B
  • J5H · ~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] naphthalene-2-carbothioate · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6QKR · 2-Naphthoyl-CoA Reductase-2-Naphthoyl-CoA complex(NCR-NCoA-soaked complex) · the same entry in another collection · chain A against A, TM-score 1.00

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