MolNFT v1 · #161641 · protein
2-naphthoyl-CoA reductase-2-naphthoyl-CoA COMPLEX(NCR-ncoa-soaked complex)
6QKR: “2-naphthoyl-CoA reductase-2-naphthoyl-CoA COMPLEX(NCR-ncoa-soaked complex)”. X-ray diffraction, 4 ligands (SF4, FAD, FMN). MolNFT v1 #161641 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6QKR
- Type
- protein
- Length
- 1,324 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- E1YD54
- Ligands
- SF4, FAD, FMN, J5H
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 660 | — | E1YD54 |
| B | — | protein | 664 | — | E1YD54 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 2 copies · chains A, B
- FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
- FMN · Flavin mononucleotide · ligand · 2 copies · chains A, B
- J5H · ~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] naphthalene-2-carbothioate · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6QKR · 2-Naphthoyl-CoA Reductase-2-Naphthoyl-CoA complex(NCR-NCoA-soaked complex) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E1YD54
- Elsewhere: RCSB PDB 6QKR · PDBe 6QKR · UniProt E1YD54
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