MolNFT v1 · #161550 · protein
Time resolved structural analysis of the full turnover of an enzyme - 4512 ms
6QHW · Fluoroacetate dehalogenase: “Time resolved structural analysis of the full turnover of an enzyme - 4512 ms”. X-ray diffraction, 2 ligands (GOA, FAH), 3 pockets (best druggability 0.68). MolNFT v1 #161550 on GenesisL1: 3D structure…
- PDB
- 6QHW
- Type
- protein
- Length
- 594 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fluoroacetate dehalogenase
- EC
- 3.8.1.3
- UniProt
- Q6NAM1
- Ligands
- GOA, FAH
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Fluoroacetate dehalogenase (EC 3.8.1.3) | protein | 297 | 47% helix, 16% strand | Q6NAM1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 77 | 0.68 | 0.94 | 18 | FAH |
| 2 | 104 | 0.38 | 0.75 | 25 | empty |
| 3 | 68 | 0.30 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1156 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 6QHW · Time resolved structural analysis of the full turnover of an enzyme - 4512 ms · the same entry in another collection · chain A against A, TM-score 1.00
- Q6NAM1 · AlphaFold monomer V2.0 prediction for fluoroacetate dehalogenase (Q6NAM1) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6NAM1
- Elsewhere: RCSB PDB 6QHW · PDBe 6QHW · UniProt Q6NAM1
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