MolNFT v1 · #161470 · protein
Mamb ctd magnetosome protein [desulfamplus magnetovallimortis bw-1]
6QFJ · Magnetosome membrane protein mamb, putative CO/ZN/CD cation…: “Mamb ctd magnetosome protein [desulfamplus magnetovallimortis bw-1]”. X-ray diffraction, 7 pockets (best druggability 0.75). MolNFT v1 #161470 on GenesisL1: 3D…
- PDB
- 6QFJ
- Type
- protein
- Length
- 493 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Magnetosome membrane protein mamb, putative CO/ZN/CD cation transporter. cation diffusion…
- UniProt
- L0R6P9
- Pockets
- 7 · best druggability 0.75
Structure
x-ray diffraction · 3 distinct chains · 37% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Magnetosome membrane protein mamb, putative CO/ZN/CD cation transporter. cation diffusion facilitator family | protein | 84 | 38% helix, 36% strand | L0R6P9 |
| B, C | Magnetosome membrane protein mamb, putative CO/ZN/CD cation transporter. cation diffusion facilitator family | protein | 83 | 37% helix, 35% strand | L0R6P9 |
| D, E, F | Magnetosome membrane protein mamb, putative CO/ZN/CD cation transporter. cation diffusion facilitator family | protein | 81 | 36% helix, 36% strand | L0R6P9 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 448 | 0.75 | 0.84 | 50 | empty |
| 2 | 318 | 0.58 | 0.77 | 42 | empty |
| 3 | 162 | 0.46 | 0.76 | 21 | empty |
| 4 | 128 | 0.38 | 0.74 | 20 | empty |
| 5 | 83 | 0.35 | 0.75 | 12 | empty |
Interfaces
9 interfaces between chains.
- A–B · 428 Ų buried · 2 hydrogen bonds · protein-protein
- B–D · 408 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 407 Ų buried · 5 hydrogen bonds · protein-protein
- B–C · 377 Ų buried · 3 hydrogen bonds · protein-protein
- A–D · 357 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 6QFJ · MamB CTD magnetosome protein [Desulfamplus magnetovallimortis BW-1] · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt L0R6P9
- Elsewhere: RCSB PDB 6QFJ · PDBe 6QFJ · UniProt L0R6P9
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