Research workbench

Mamb ctd magnetosome protein [desulfamplus magnetovallimortis bw-1]

Analyse Mamb ctd magnetosome protein [desulfamplus magnetovallimortis bw-1] in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6QFJ
Type: protein
Length: 493 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Magnetosome membrane protein mamb, putative CO/ZN/CD cation transporter. cation diffusion…
UniProt: L0R6P9
Pockets: 7 · best druggability 0.75

Structure

x-ray diffraction · 3 distinct chains · 37% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Magnetosome membrane protein mamb, putative CO/ZN/CD cation transporter. cation diffusion facilitator family	protein	84	38% helix, 36% strand	L0R6P9
B, C	Magnetosome membrane protein mamb, putative CO/ZN/CD cation transporter. cation diffusion facilitator family	protein	83	37% helix, 35% strand	L0R6P9
D, E, F	Magnetosome membrane protein mamb, putative CO/ZN/CD cation transporter. cation diffusion facilitator family	protein	81	36% helix, 36% strand	L0R6P9

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	448	0.75	0.84	50	empty
2	318	0.58	0.77	42	empty
3	162	0.46	0.76	21	empty
4	128	0.38	0.74	20	empty
5	83	0.35	0.75	12	empty

Interfaces

9 interfaces between chains.

A–B · 428 Å² buried · 2 hydrogen bonds · protein-protein
B–D · 408 Å² buried · 5 hydrogen bonds · protein-protein
A–C · 407 Å² buried · 5 hydrogen bonds · protein-protein
B–C · 377 Å² buried · 3 hydrogen bonds · protein-protein
A–D · 357 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

6QFJ · MamB CTD magnetosome protein [Desulfamplus magnetovallimortis BW-1] · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt L0R6P9
Elsewhere: RCSB PDB 6QFJ · PDBe 6QFJ · UniProt L0R6P9

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