MolNFT v1 · #161405 · protein

Anti-sigma factor domain-containing protein from clostridium clariflavum

6QDI · PA14 domain-containing protein: “Anti-sigma factor domain-containing protein from clostridium clariflavum”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.35). MolNFT v1 #161405 on GenesisL1: 3D structure, binding…

PDB: 6QDI
Type: protein
Length: 294 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: PA14 domain-containing protein
UniProt: G8M2Z2
Ligands: CA
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 2% helix, 59% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	PA14 domain-containing protein	protein	294	2% helix, 59% strand	G8M2Z2

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains A
EDO · 1,2-ethanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	125	0.35	0.72	22	empty

Compared structures

6QDI · anti-sigma factor domain-containing protein from Clostridium clariflavum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G8M2Z2
Elsewhere: RCSB PDB 6QDI · PDBe 6QDI · UniProt G8M2Z2

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