MolNFT v1 · #161250 · protein
Nterminal domain of human SMU1
6Q8F · WD40 repeat-containing protein SMU1: “Nterminal domain of human SMU1”. X-ray diffraction, 1 ligand (CL), 3 pockets (best druggability 0.61). MolNFT v1 #161250 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Q8F
- Type
- protein
- Length
- 381 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- WD40 repeat-containing protein SMU1
- UniProt
- Q2TAY7
- Ligands
- CL
- Pockets
- 3 · best druggability 0.61
Structure
x-ray diffraction · 2 distinct chains · 67% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | WD40 repeat-containing protein SMU1 | protein | 197 | 66% helix, 0% strand | Q2TAY7 |
| B | WD40 repeat-containing protein SMU1 | protein | 184 | 67% helix, 0% strand | Q2TAY7 |
Ligands and binding sites
- CL · Chloride ion · ion · chains B
- BTB · 2-[bis-(2-hydroxy-ethyl)-amino]-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 255 | 0.61 | 0.80 | 44 | empty |
| 2 | 214 | 0.52 | 0.77 | 29 | empty |
| 3 | 196 | 0.48 | 0.75 | 30 | empty |
Interfaces
1 interface between chains.
- A–B · 1000 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2TAY7
- Elsewhere: RCSB PDB 6Q8F · PDBe 6Q8F · UniProt Q2TAY7
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