MolNFT v1 · #16125 · protein
Refined X-ray structure of dictyostelium nucleoside diphosphate kinase at 1,8 ångströms resolution
1NPK: “Refined X-ray structure of dictyostelium nucleoside diphosphate kinase at 1,8 ångströms resolution”. X-ray diffraction, 1 pocket (best druggability 0.50). MolNFT v1 #16125 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1NPK
- Type
- protein
- Length
- 150 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoside diphosphate kinase
- EC
- 2.7.4.6
- UniProt
- P22887
- Pockets
- 1 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoside diphosphate kinase (EC 2.7.4.6) | protein | 150 | 43% helix, 17% strand | P22887 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 164 | 0.50 | 0.78 | 25 | empty |
Compared structures
- 1NPK · Refined X-ray structure of dictyostelium nucleoside diphosphate kinase at 1,8 ångströms… · the same entry in another collection · chain A against A, TM-score 1.00
- P22887 · AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase, cytosolic (P22887) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P22887
- Elsewhere: RCSB PDB 1NPK · PDBe 1NPK · UniProt P22887
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