MolNFT v1 · #161065 · protein
Crystal structure of photinus pyralis luciferase PPS6 mutant in complex with dlsa
6Q2M: “Crystal structure of photinus pyralis luciferase PPS6 mutant in complex with dlsa”. X-ray diffraction, 3 ligands (DYD, SLU, SO4). MolNFT v1 #161065 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Q2M
- Type
- protein
- Length
- 1,494 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P08659
- Ligands
- DYD, SLU, SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 544 | — | P08659 |
| B | — | protein | 512 | — | P08659 |
| C | — | protein | 438 | — | P08659 |
Ligands and binding sites
- DYD · (2S,5S)-hexane-2,5-diol · ligand · 4 copies · chains A, C
- SLU · 5'-O-[N-(dehydroluciferyl)-sulfamoyl] adenosine · ligand · 3 copies · chains A, B, C
- SO4 · Sulfate ion · ion · 6 copies · chains A, B, C
- EDO · 1,2-ethanediol · additive · 39 copies · chains A, C, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Q2M · Crystal structure of Photinus pyralis Luciferase Pps6 mutant in complex with DLSA · the same entry in another collection · chain A against A, TM-score 1.00
- P08659 · AlphaFold monomer V2.0 prediction for luciferin 4-monooxygenase (P08659) · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08659
- Elsewhere: RCSB PDB 6Q2M · PDBe 6Q2M · UniProt P08659
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