MolNFT v1 · #160992 · protein
Crystal structure of ldha in complex with compound NCGC00384414-01 at 2.05 a resolution
6Q0D: “Crystal structure of ldha in complex with compound NCGC00384414-01 at 2.05 a resolution”. X-ray diffraction, 3 ligands (P8M, NAI, PO4). MolNFT v1 #160992 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Q0D
- Type
- protein
- Length
- 1,986 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00338
- Ligands
- P8M, NAI, PO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | — | protein | 331 | — | P00338 |
Ligands and binding sites
- P8M · 2-{3-[3-(cyclopentylethynyl)-4-fluorophenyl]-5-(cyclopropylmethyl)-4-[(3-fluoro-4-sulfamoylphenyl) methyl]-1H-pyrazol-1-yl}-1,3-thiazole-4-carboxylic acid · ligand · 6 copies · chains A, B, C, D, E, F
- NAI · 1,4-dihydronicotinamide adenine dinucleotide · ligand · 6 copies · chains A, B, C, D, E, F
- PO4 · Phosphate ion · ion · 6 copies · chains A, C, B, D, E, F
- GOL · Glycerol · additive · 6 copies · chains B, C, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Q0D · Crystal structure of ldha in complex with compound NCGC00384414-01 at 2.05 a resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00338
- Elsewhere: RCSB PDB 6Q0D · PDBe 6Q0D · UniProt P00338
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