MolNFT v1 · #160845 · protein
LARP1 DM15 fyre (F844Y, R847E) mutant bound to M7GPPPG dinucleotide (capg)
6PW3: “LARP1 DM15 fyre (F844Y, R847E) mutant bound to M7GPPPG dinucleotide (capg)”. X-ray diffraction, 2 ligands (GTG, MG). MolNFT v1 #160845 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PW3
- Type
- protein
- Length
- 576 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6PKG0
- Ligands
- GTG, MG
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | — | protein | 149 | — | Q6PKG0 |
| A | — | protein | 144 | — | Q6PKG0 |
| B | — | protein | 140 | — | Q6PKG0 |
| D | — | protein | 143 | — | Q6PKG0 |
Ligands and binding sites
- GTG · 7-methyl-guanosine-5'-triphosphate-5'-guanosine · ligand · 2 copies · chains C, B
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PW3 · LARP1 DM15 FYRE (F844Y, R847E) mutant bound to m7GpppG dinucleotide (capG) · the same entry in another collection · chain D against D, TM-score 1.00
- Q6PKG0 · AlphaFold monomer V2.0 prediction for la-related protein 1 (Q6PKG0) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6PKG0
- Elsewhere: RCSB PDB 6PW3 · PDBe 6PW3 · UniProt Q6PKG0
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