MolNFT v1 · #160819 · protein

Structure of human mait a-F7 TCR in complex with human MR1-NV18.1

6PVD: “Structure of human mait a-F7 TCR in complex with human MR1-NV18.1”. X-ray diffraction, 2 ligands (N18, NA). MolNFT v1 #160819 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6PVD
Type: protein
Length: 1,606 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q95460, P61769
Ligands: N18, NA

Structure

x-ray diffraction · 8 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	265	—	Q95460
B	—	protein	98	—	P61769
C	—	protein	266	—	Q95460
D	—	protein	192	—	—
E	—	protein	241	—	—
F	—	protein	100	—	P61769
G	—	protein	200	—	—
H	—	protein	244	—	—

Ligands and binding sites

N18 · methyl N-(2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carbonyl)-beta-alaninate · ligand · 2 copies · chains A, G, C, D
NA · Sodium ion · metal · chains E
GOL · Glycerol · additive · 2 copies · chains A
ACT · Acetate ion · additive · chains H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6PVD · Structure of human MAIT A-F7 TCR in complex with human MR1-NV18.1 · the same entry in another collection · chain H against H, TM-score 1.00
P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q95460
Every structure of UniProt P61769
Elsewhere: RCSB PDB 6PVD · PDBe 6PVD · UniProt Q95460 · UniProt P61769

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