MolNFT v1 · #160793 · protein
Structure of human mait a-F7 TCR in complex with human MR1-2'D-5-op-ru
6PUM: “Structure of human mait a-F7 TCR in complex with human MR1-2'D-5-op-ru”. X-ray diffraction, 2 ligands (Q84, NA). MolNFT v1 #160793 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PUM
- Type
- protein
- Length
- 1,615 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q95460, P61769
- Ligands
- Q84, NA
Structure
x-ray diffraction · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 265 | — | Q95460 |
| B | — | protein | 98 | — | P61769 |
| C | — | protein | 269 | — | Q95460 |
| D | — | protein | 196 | — | — |
| E | — | protein | 242 | — | — |
| F | — | protein | 99 | — | P61769 |
| G | — | protein | 202 | — | — |
| H | — | protein | 244 | — | — |
Ligands and binding sites
- Q84 · 1,2-dideoxy-1-({2,6-dioxo-5-[(E)-(2-oxopropylidene) amino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-erythro-pentitol · ligand · 2 copies · chains A, G, C, D
- NA · Sodium ion · metal · 4 copies · chains A, B, F, H
- GOL · Glycerol · additive · 6 copies · chains A, H, C, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PUM · Structure of human MAIT A-F7 TCR in complex with human MR1-2'D-5-OP-RU · the same entry in another collection · chain H against H, TM-score 1.00
- P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q95460
- Every structure of UniProt P61769
- Elsewhere: RCSB PDB 6PUM · PDBe 6PUM · UniProt Q95460 · UniProt P61769
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