MolNFT v1 · #160491 · protein
Cryoem structure of zebra fish alpha-1 glycine receptor bound with GABA in sma, open state
6PLY: “Cryoem structure of zebra fish alpha-1 glycine receptor bound with GABA in sma, open state”. Electron microscopy, 3 ligands (ABU, NAG, BMA). MolNFT v1 #160491 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PLY
- Type
- protein
- Length
- 1,730 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O93430
- Ligands
- ABU, NAG, BMA
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | — | protein | 346 | — | O93430 |
Ligands and binding sites
- ABU · Gamma-amino-butanoic acid · ligand · 5 copies · chains A, B, E, C, D
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 10 copies · chains A, B, C, D, E
- BMA · beta-D-mannopyranose · sugar · 5 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PLY · CryoEM structure of zebra fish alpha-1 glycine receptor bound with GABA in SMA, open state · the same entry in another collection · chain E against E, TM-score 1.00
- O93430 · AlphaFold monomer V2.0 prediction for glycine receptor subunit ALPHAZ1 (O93430) · a predicted model of the same protein · chain D against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O93430
- Elsewhere: RCSB PDB 6PLY · PDBe 6PLY · UniProt O93430
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