MolNFT v1 · #160474 · protein

Fab fragment complexed with C-mannosylated tryptophan peptide

6PLH: “Fab fragment complexed with C-mannosylated tryptophan peptide”. X-ray diffraction, 2 ligands (MAN, PO4). MolNFT v1 #160474 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6PLH
Type: protein
Length: 446 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9HBE5
Ligands: MAN, PO4

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	219	—	—
B	—	protein	219	—	—
C	—	protein	8	—	Q9HBE5

Ligands and binding sites

MAN · alpha-D-mannopyranose · sugar · chains A, B, C
PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6PLH · FAB fragment complexed with C-mannosylated tryptophan peptide · the same entry in another collection · chain A against A, TM-score 1.00
Q9HBE5 · AlphaFold monomer V2.0 prediction for interleukin-21 receptor (Q9HBE5) · a predicted model of the same protein · chain C against A, TM-score 0.59

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9HBE5
Elsewhere: RCSB PDB 6PLH · PDBe 6PLH · UniProt Q9HBE5

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