MolNFT v1 · #160183 · protein
Pntc-aept: fusion protein of phosphonate-specific cytidylyltransferase and 2-aminoethylphosphonate (aep) transaminase from treponema denticola
6PD1: “Pntc-aept: fusion protein of phosphonate-specific cytidylyltransferase and 2-aminoethylphosphonate (aep)…”. X-ray diffraction, 3 ligands (MG, NI, SO4). MolNFT v1 #160183 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PD1
- Type
- protein
- Length
- 2,448 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q73MU2
- Ligands
- MG, NI, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 613 | — | Q73MU2 |
| B | — | protein | 607 | — | Q73MU2 |
| C | — | protein | 617 | — | Q73MU2 |
| D | — | protein | 611 | — | Q73MU2 |
Ligands and binding sites
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
- NI · Nickel (II) ion · metal · chains C
- SO4 · Sulfate ion · ion · 11 copies · chains A, C, B, D
- EDO · 1,2-ethanediol · additive · 6 copies · chains A, B, C, D
- GOL · Glycerol · additive · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PD1 · PntC-AEPT: fusion protein of phosphonate-specific cytidylyltransferase and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q73MU2
- Elsewhere: RCSB PDB 6PD1 · PDBe 6PD1 · UniProt Q73MU2
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