MolNFT v1 · #160156 · protein + RNA
E. COLI 50S ribosome bound to compound 46
6PC7: “E. COLI 50S ribosome bound to compound 46”. Electron microscopy, 1 ligand (O7V). MolNFT v1 #160156 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PC7
- Type
- protein + RNA
- Length
- 3,979 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P60422, A0A037Y8L6, D7Z9F6, P60438, D7ZET0
- Ligands
- O7V
Structure
electron microscopy · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| I | — | rna | 2897 | — | — |
| J | — | rna | 118 | — | — |
| K | — | protein | 271 | — | P60422 |
| L | — | protein | 144 | — | A0A037Y8L6 |
| M | — | protein | 201 | — | D7Z9F6 |
| N | — | protein | 206 | — | P60438 |
| O | — | protein | 142 | — | D7ZET0 |
Ligands and binding sites
- O7V · (2R)-2-[(3s,4r,5e,10e,12e,14s,16r,26ar)-16-fluoro-14-hydroxy-4,12-dimethyl-1,7,22-trioxo-4,7,8,9,14,15,16, 17,24,25,26,26A-dodecahydro-1H,3H,22H-21,18-(azeno) pyrrolo[2,1-c][1,8,4,19]dioxadiazacyclotetracosin-3-yl]propyl isoquinolin-3-ylcarbamate · ligand · chains I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PC7 · E. coli 50S ribosome bound to compound 46 · the same entry in another collection · chain I against I, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P60422
- Every structure of UniProt A0A037Y8L6
- Every structure of UniProt D7Z9F6
- Every structure of UniProt P60438
- Every structure of UniProt D7ZET0
- Elsewhere: RCSB PDB 6PC7 · PDBe 6PC7 · UniProt P60422 · UniProt A0A037Y8L6 · UniProt D7Z9F6 · UniProt P60438 · UniProt D7ZET0
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