MolNFT v1 · #160127 · protein

ZINC17988990-bound TRPV5 in nanodiscs

6PBE: “ZINC17988990-bound TRPV5 in nanodiscs”. Electron microscopy, 1 ligand (O6S). MolNFT v1 #160127 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6PBE
Type: protein
Length: 2,416 residues
Chains: 4
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9XSM3
Ligands: O6S

Structure

electron microscopy · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	—	protein	604	—	Q9XSM3

Ligands and binding sites

O6S · (4-oxo-5-phenyl-3,4-dihydrothieno[2,3-d]pyrimidin-2-yl)methyl 3-(3-oxo-2,3-dihydro-4H-1,4-benzoxazin-4-yl)propanoate · ligand · 8 copies · chains A, C, B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6PBE · ZINC17988990-bound TRPV5 in nanodiscs · the same entry in another collection · chain A against A, TM-score 1.00
Q9XSM3 · AlphaFold monomer V2.0 prediction for transient receptor potential cation channel… · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9XSM3
Elsewhere: RCSB PDB 6PBE · PDBe 6PBE · UniProt Q9XSM3

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