MolNFT v1 · #160077 · protein
Poliovirus (type 1 mahoney), receptor catalysed 135S particle MAP
6P9W · VP1: “Poliovirus (type 1 mahoney), receptor catalysed 135S particle MAP”. Electron microscopy, 7 pockets (best druggability 0.47). MolNFT v1 #160077 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6P9W
- Type
- protein
- Length
- 637 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VP1; VP2; VP3
- UniProt
- P03300, Q8QYM4
- Pockets
- 7 · best druggability 0.47
Structure
electron microscopy · 3 distinct chains · 9% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1 | VP1 | protein | 191 | 10% helix, 41% strand | P03300 |
| 2 | VP2 | protein | 218 | 9% helix, 39% strand | P03300 |
| 3 | VP3 | protein | 228 | 8% helix, 32% strand | Q8QYM4 |
Pockets
7 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 250 | 0.47 | 0.73 | 32 | empty |
| 2 | 57 | 0.46 | 0.84 | 18 | empty |
| 3 | 133 | 0.44 | 0.77 | 25 | empty |
| 4 | 96 | 0.38 | 0.76 | 24 | empty |
| 5 | 67 | 0.36 | 0.78 | 20 | empty |
Interfaces
3 interfaces between chains.
- 1–3 · 2230 Ų buried · 38 hydrogen bonds · protein-protein
- 2–3 · 1654 Ų buried · 20 hydrogen bonds · protein-protein
- 1–2 · 986 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6P9W · Poliovirus (Type 1 Mahoney), receptor catalysed 135S particle map · the same entry in another collection · chain 1 against 1, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03300
- Every structure of UniProt Q8QYM4
- Elsewhere: RCSB PDB 6P9W · PDBe 6P9W · UniProt P03300 · UniProt Q8QYM4
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