MolNFT v1 · #160035 · protein
Structure of P. aeruginosa ATCC27853 HORMA1
6P8P · Uncharacterized protein: “Structure of P. aeruginosa ATCC27853 HORMA1”. X-ray diffraction, 1 ligand (CA), 5 pockets (best druggability 0.58). MolNFT v1 #160035 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6P8P
- Type
- protein
- Length
- 522 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- A0A0F6RRN7
- Ligands
- CA
- Pockets
- 5 · best druggability 0.58
Structure
x-ray diffraction · 3 distinct chains · 39% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 132 | 39% helix, 23% strand | A0A0F6RRN7 |
| B, C | Uncharacterized protein | protein | 130 | 37% helix, 23% strand | A0A0F6RRN7 |
| D | Uncharacterized protein | protein | 130 | 40% helix, 23% strand | A0A0F6RRN7 |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 309 | 0.58 | 0.77 | 38 | empty |
| 2 | 280 | 0.56 | 0.77 | 43 | CA |
| 3 | 150 | 0.46 | 0.76 | 23 | empty |
| 4 | 119 | 0.39 | 0.74 | 30 | empty |
| 5 | 112 | 0.38 | 0.75 | 14 | empty |
Interfaces
5 interfaces between chains.
- C–D · 366 Ų buried · 9 hydrogen bonds · protein-protein
- A–B · 279 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 240 Ų buried · 5 hydrogen bonds · protein-protein
- B–D · 240 Ų buried · 5 hydrogen bonds · protein-protein
- B–C · 94 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 6P8P · Structure of P. aeruginosa ATCC27853 HORMA1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F6RRN7
- Elsewhere: RCSB PDB 6P8P · PDBe 6P8P · UniProt A0A0F6RRN7
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