MolNFT v1 · #160034 · protein

Structure of P. aeruginosa ATCC27853 HORMA2-deltac

6P8O · Horma domain containing protein: “Structure of P. aeruginosa ATCC27853 HORMA2-deltac”. X-ray diffraction, 2 ligands (NI, CL), 1 pocket (best druggability 0.37). MolNFT v1 #160034 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 6P8O
Type: protein
Length: 258 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Horma domain containing protein
UniProt: Q8GQ50
Ligands: NI, CL
Pockets: 1 · best druggability 0.37

Structure

x-ray diffraction · 2 distinct chains · 38% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Horma domain containing protein	protein	128	38% helix, 29% strand	Q8GQ50
B	Horma domain containing protein	protein	130	38% helix, 29% strand	Q8GQ50

Ligands and binding sites

NI · Nickel (II) ion · metal · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	69	0.37	0.77	14	empty

Interfaces

1 interface between chains.

A–B · 493 Å² buried · 4 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (methylation).

Compared structures

6P8O · Structure of P. aeruginosa ATCC27853 HORMA2-deltaC · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8GQ50
Elsewhere: RCSB PDB 6P8O · PDBe 6P8O · UniProt Q8GQ50

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