MolNFT v1 · #159979 · protein
Cytochrome-C-nitrite reductase
6P73 · Cytochrome C-552: “Cytochrome-C-nitrite reductase”. X-ray diffraction, 2 ligands (HEC, CA), 10 pockets (best druggability 0.87). MolNFT v1 #159979 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6P73
- Type
- protein
- Length
- 878 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C-552
- EC
- 1.7.2.2
- UniProt
- Q8EAC7
- Ligands
- HEC, CA
- Pockets
- 10 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cytochrome C-552 (EC 1.7.2.2) | protein | 439 | 56% helix, 5% strand | Q8EAC7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 527 | 0.87 | 0.93 | 91 | HEC |
| 2 | 400 | 0.83 | 0.91 | 50 | HEC |
| 3 | 98 | 0.69 | 0.92 | 26 | HEC |
| 4 | 95 | 0.67 | 0.92 | 24 | HEC |
| 5 | 57 | 0.64 | 0.93 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1762 Ų buried · 19 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 18 cofactor (heme c attachment).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EAC7
- Elsewhere: RCSB PDB 6P73 · PDBe 6P73 · UniProt Q8EAC7
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