MolNFT v1 · #159839 · protein
Crystal structure of niastella koreensis GH74 (NKGH74) enzyme
6P2L · Glycosyl hydrolase bnr repeat-containing protein: “Crystal structure of niastella koreensis GH74 (NKGH74) enzyme”. X-ray diffraction, 5 ligands (BGC, XYS, GLC), 5 pockets (best druggability 0.83). MolNFT v1 #159839 on GenesisL1: 3D…
- PDB
- 6P2L
- Type
- protein
- Length
- 685 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycosyl hydrolase bnr repeat-containing protein
- UniProt
- G8TAF2
- Ligands
- BGC, XYS, GLC, GAL, CL
- Pockets
- 5 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycosyl hydrolase bnr repeat-containing protein | protein | 685 | 3% helix, 40% strand | G8TAF2 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 7 copies · chains A
- XYS · alpha-D-xylopyranose · sugar · 6 copies · chains A
- GLC · alpha-D-glucopyranose · sugar · chains A
- GAL · beta-D-galactopyranose · sugar · chains A
- CL · Chloride ion · ion · 27 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 182 | 0.83 | 0.97 | 28 | CL |
| 2 | 438 | 0.81 | 0.89 | 37 | CL |
| 3 | 151 | 0.43 | 0.75 | 32 | GLC, BGC, XYS, CL |
| 4 | 156 | 0.41 | 0.74 | 27 | empty |
| 5 | 94 | 0.36 | 0.75 | 23 | CL |
Compared structures
- 6P2L · Crystal structure of Niastella koreensis GH74 (NkGH74) enzyme · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G8TAF2
- Elsewhere: RCSB PDB 6P2L · PDBe 6P2L · UniProt G8TAF2
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