MolNFT v1 · #159805 · protein + DNA
Binary complex of human DNA polymerase mu with 1-nt gapped substrate containing template 8OG
6P1M: “Binary complex of human DNA polymerase mu with 1-nt gapped substrate containing template 8OG”. X-ray diffraction, 4 ligands (K, BR, CL). MolNFT v1 #159805 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6P1M
- Type
- protein + DNA
- Length
- 342 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NP87
- Ligands
- K, BR, CL, CO2
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 325 | — | Q9NP87 |
| T | — | dna | 9 | — | — |
| P | — | dna | 4 | — | — |
| D | — | dna | 4 | — | — |
Ligands and binding sites
- K · Potassium ion · metal · chains A, P
- BR · Bromide ion · ion · 2 copies · chains A, T
- CL · Chloride ion · ion · 2 copies · chains A, D, T
- CO2 · Carbon dioxide · ion · chains A
- EDO · 1,2-ethanediol · additive · 6 copies · chains A, P
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6P1M · Binary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NP87 · AlphaFold monomer V2.0 prediction for DNA-directed DNA/RNA polymerase mu (Q9NP87) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NP87
- Elsewhere: RCSB PDB 6P1M · PDBe 6P1M · UniProt Q9NP87
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