MolNFT v1 · #159761 · protein + DNA
Human DNA ligase 1 (E346A/E592A) bound to an adenylated, dideoxy terminated DNA nick with 200 mm MG2+
6P0B: “Human DNA ligase 1 (E346A/E592A) bound to an adenylated, dideoxy terminated DNA nick with 200 mm MG2+”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #159761 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6P0B
- Type
- protein + DNA
- Length
- 679 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P18858
- Ligands
- MG
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 642 | — | P18858 |
| B | — | dna | 11 | — | — |
| C | — | dna | 8 | — | — |
| D | — | dna | 18 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 4 copies · chains A, B, C
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6P0B · Human DNA Ligase 1 (E346A/E592A) Bound to an Adenylated, dideoxy Terminated DNA nick with… · the same entry in another collection · chain A against A, TM-score 1.00
- P18858 · AlphaFold monomer V2.0 prediction for DNA ligase 1 (P18858) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P18858
- Elsewhere: RCSB PDB 6P0B · PDBe 6P0B · UniProt P18858
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