MolNFT v1 · #159622 · protein
2.1 ångström structure of wild type GLYOXYLATE/HYDROXYPYRUVATE reductase a from escherichia COLI in complex with glyoxylate and NADP
6OVL: “2.1 ångström structure of wild type GLYOXYLATE/HYDROXYPYRUVATE reductase a from escherichia COLI in complex…”. X-ray diffraction, 5 ligands (NAP, GLV, K), 2 pockets (best druggability 0.73). MolNFT v1 #159622 on GenesisL1: 3D…
- PDB
- 6OVL
- Type
- protein
- Length
- 313 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GLYOXYLATE/HYDROXYPYRUVATE reductase a
- EC
- 1.1.1.79, 1.1.1.81
- UniProt
- W8T4J3
- Ligands
- NAP, GLV, K, NA, PO4
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GLYOXYLATE/HYDROXYPYRUVATE reductase a (EC 1.1.1.79, 1.1.1.81) | protein | 313 | 34% helix, 18% strand | W8T4J3 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
- GLV · Glyoxylic acid · ligand · chains A
- K · Potassium ion · metal · chains A
- NA · Sodium ion · metal · chains A
- PO4 · Phosphate ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 521 | 0.73 | 0.82 | 62 | NAP, GLV, PO4 |
| 2 | 65 | 0.30 | 0.75 | 14 | empty |
Compared structures
- 6OVL · 2.1 Angstrom structure of wild type Glyoxylate/Hydroxypyruvate reductase A from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W8T4J3
- Elsewhere: RCSB PDB 6OVL · PDBe 6OVL · UniProt W8T4J3
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