MolNFT v1 · #159441 · protein

Phosphorylated ERK2 with AMP-pnp

6OPG · Mitogen-activated protein kinase 1: “Phosphorylated ERK2 with AMP-pnp”. X-ray diffraction, 2 ligands (ANP, MG), 3 pockets (best druggability 0.68). MolNFT v1 #159441 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6OPG
Type: protein
Length: 349 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mitogen-activated protein kinase 1
EC: 2.7.11.24
UniProt: P28482
Ligands: ANP, MG
Pockets: 3 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mitogen-activated protein kinase 1 (EC 2.7.11.24)	protein	349	39% helix, 16% strand	P28482

Ligands and binding sites

ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	372	0.68	0.81	46	ANP, MG
2	74	0.54	0.86	17	empty
3	124	0.43	0.76	26	empty

Modifications

Observed in the structure: 2 modified (phosphorylation).

Compared structures

6OPG · phosphorylated ERK2 with AMP-PNP · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P28482
Elsewhere: RCSB PDB 6OPG · PDBe 6OPG · UniProt P28482

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