MolNFT v1 · #159412 · protein
PROTEIN A
6OOM · Multidrug transporter mdfa: “PROTEIN A”. X-ray diffraction, 1 ligand (PR), 2 pockets (best druggability 0.81). MolNFT v1 #159412 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6OOM
- Type
- protein
- Length
- 392 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Multidrug transporter mdfa
- UniProt
- A0A1E5MBX7
- Ligands
- PR
- Pockets
- 2 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 85% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Multidrug transporter mdfa | protein | 392 | 85% helix, 0% strand | A0A1E5MBX7 |
Ligands and binding sites
- PR · Praseodymium ion · metal · 2 copies · chains A
- LDA · Lauryl dimethylamine-N-oxide · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1164 | 0.81 | 0.82 | 76 | LDA |
| 2 | 52 | 0.30 | 0.75 | 11 | empty |
Compared structures
- 6OOM · PROTEIN A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1E5MBX7
- Elsewhere: RCSB PDB 6OOM · PDBe 6OOM · UniProt A0A1E5MBX7
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